Avoiding growing pains in reproductive trait databases: the curse of dimensionality

Authors: Samuel C Ginther, Hayley Cameron, Craig R White, and Dustin J Marshall

Published in: Global Ecology and Biogeography

Abstract

Aim: Reproductive output features prominently in many trait databases, but the metrics describing it vary and are often untethered to temporal and volumetric dimensions (e.g., fecundity per bout). The use of such ambiguous reproductive measures to make broad-scale comparisons across taxonomic groups will be meaningful only if they show a 1:1 relationship with a reproductive measure that explicitly includes both a volumetric and a temporal component (i.e., reproductive mass per year). We sought to map the prevalence of ambiguous and explicit reproductive measures across taxa and to explore their relationships with one another to determine the cross-compatibility and utility of reproductive metrics in trait databases.

Location: Global.

Time period: 1990–2021.

Major taxa studied: We searched for reproductive measures across all Metazoa and identified 19,785 vertebrate species (Chordata), and 440 invertebrate species (Arthropoda, Cnidaria or Mollusca).

Methods: We included 37 databases, from which we summarized the commonality of reproductive metrics across taxonomic groups. We also quantified scaling relationships between ambiguous reproductive traits (fecundity per bout, fecundity per year and reproductive mass per bout) and an explicit measure (reproductive mass per year) to assess their cross-compatibility.

Results: Most species were missing at least one temporal or volumetric dimension of reproductive output, such that reproductive mass per year could be reconstructed for only 4,786 vertebrate species. Ambiguous reproductive measures were poor predictors of reproductive mass per year; in no instance did these measures scale at 1:1.

Main conclusions: Ambiguous measures systematically misestimate reproductive mass per year. Until more data are collected, we suggest that researchers should use the clade-specific scaling relationships provided here to convert ambiguous reproductive measures to reproductive mass per year.

Ginther SC, Cameron H, White CR, Marshall DJ (2022) Avoiding growing pains in reproductive trait databases: the curse of dimensionality. Global Ecology and Biogeography PDF DOI

Carry-over effects and fitness trade-offs in marine life histories: The costs of complexity for adaptation

Authors Dustin J Marshall and Tim Connallon

Published in Evolutionary Applications

Abstract

Most marine organisms have complex life histories, where the individual stages of a life cycle are often morphologically and ecologically distinct. Nevertheless, life-history stages share a single genome and are linked phenotypically (by “carry-over effects”). These commonalities across the life history couple the evolutionary dynamics of different stages and provide an arena for evolutionary constraints. The degree to which genetic and phenotypic links among stages hamper adaptation in any one stage remains unclear and yet adaptation is essential if marine organisms will adapt to future climates.

Here, we use an extension of Fisher’s geometric model to explore how both carry-over effects and genetic links among life-history stages affect the emergence of pleiotropic trade-offs between fitness components of different stages. We subsequently explore the evolutionary trajectories of adaptation of each stage to its optimum using a simple model of stage-specific viability selection with nonoverlapping generations.

We show that fitness trade-offs between stages are likely to be common and that such trade-offs naturally emerge through either divergent selection or mutation. We also find that evolutionary conflicts among stages should escalate during adaptation, but carry-over effects can ameliorate this conflict.

Carry-over effects also tip the evolutionary balance in favor of better survival in earlier life-history stages at the expense of poorer survival in later stages. This effect arises in our discrete-generation framework and is, therefore, unrelated to age-related declines in the efficacy of selection that arise in models with overlapping generations.

Our results imply a vast scope for conflicting selection between life-history stages, with pervasive evolutionary constraints emerging from initially modest selection differences between stages. Organisms with complex life histories should also be more constrained in their capacity to adapt to global change than those with simple life histories.

Marshall DJ, Connallon T (2022) Carry‐over effects and fitness trade‐offs in marine life histories: The costs of complexity for adaptation. Evolutionary Applications PDF DOI

Metabolic scaling is the product of life-history optimization

Authors: Craig R White, Lesley A Alton, Candice L Bywater, Emily J Lombardi and Dustin J Marshall

Published in: Science

Abstract

Organisms use energy to grow and reproduce, so the processes of energy metabolism and biological production should be tightly bound. On the basis of this tenet, we developed and tested a new theory that predicts the relationships among three fundamental aspects of life: metabolic rate, growth, and reproduction.

We show that the optimization of these processes yields the observed allometries of metazoan life, particularly metabolic scaling. We conclude that metabolism, growth, and reproduction are inextricably linked; that together they determine fitness; and, in contrast to longstanding dogma, that no single component drives another.

Our model predicts that anthropogenic change will cause animals to evolve decreased scaling exponents of metabolism, increased growth rates, and reduced lifetime reproductive outputs, with worrying consequences for the replenishment of future populations.

White CR, Alton LA, Bywater CL, Lombardi EJ, Marshall DJ (2022) Metabolic scaling is the product of life-history optimization. Science DOI

Long-term experimental evolution decouples size and production costs in Escherichia coli

Authors: Dustin J Marshall, Martino Malerba, Thomas Lines, Aysha L Sezmis, Chowdhury M Hasan, Richard E Lenski, and Michael J McDonald

Published in: Proceedings of the National Academy of Sciences of the United States of America (PNAS)

Significance

Populations of larger organisms should be more efficient in their resource use, but grow more slowly, than populations of smaller organisms.

The relations between size, metabolism, and demography form the bedrock of metabolic theory, but most empirical tests have been correlative and indirect.

Experimental lineages of Escherichia coli that evolved to make larger cells provide a unique opportunity to test how size, metabolism, and demography covary. Despite the larger cells having a relatively slower metabolism, they grow faster than smaller cells. They achieve this growth rate advantage by reducing the relative costs of producing their larger cells.

That evolution can decouple the costs of production from size challenges a fundamental assumption about the connections between physiology and ecology.

Abstract

Body size covaries with population dynamics across life’s domains. Metabolism may impose fundamental constraints on the coevolution of size and demography, but experimental tests of the causal links remain elusive.

We leverage a 60,000-generation experiment in which Escherichia coli populations evolved larger cells to examine intraspecific metabolic scaling and correlations with demographic parameters.

Over the course of their evolution, the cells have roughly doubled in size relative to their ancestors. These larger cells have metabolic rates that are absolutely higher, but relative to their size, they are lower.

Metabolic theory successfully predicted the relations between size, metabolism, and maximum population density, including support for Damuth’s law of energy equivalence, such that populations of larger cells achieved lower maximum densities but higher maximum biomasses than populations of smaller cells. The scaling of metabolism with cell size thus predicted the scaling of size with maximum population density. In stark contrast to standard theory, however, populations of larger cells grew faster than those of smaller cells, contradicting the fundamental and intuitive assumption that the costs of building new individuals should scale directly with their size.

The finding that the costs of production can be decoupled from size necessitates a reevaluation of the evolutionary drivers and ecological consequences of biological size more generally.

Marshall DJ, Malerba M, Lines T, Sezmis AL, Hasan CM, Lenski RE, McDonald MJ (2022) Long-term experimental evolution decouples size and production costs in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America PDF DOI

A comparative analysis testing Werner’s theory of complex life cycles

Authors: Emily L Richardson, Craig R White, and Dustin J Marshall

Published in: Functional Ecology

Abstract

A popular theoretical model for explaining the evolution of complex life cycles (CLCs) was provided by Earl Werner. The theory predicts the size at which an individual should switch stages to maximise growth rate relative to mortality rate across the life history.

Werner’s theory assumes that body size does not change during the transition from one phase to another (e.g. from larva to adult) — a key assumption that has not been tested systematically but could alter the predictions of the model.

We quantified how growth rate and mass change across larval stages and metamorphosis for 105 species of fish, amphibians, insects, crustaceans and molluscs. Across all taxonomic groups, we found support for Werner’s assumption that growth rates are maintained or increase around transitions. We found that changes in growth and mass were greatest during metamorphosis, and change in growth correlated with development time. Importantly, most species either gained or lost mass when switching to a new stage — a direct contradiction of Werner’s assumption. When we explored the consequences of energy loss and gain in a numerical model, we found that individuals should switch stages at a larger and smaller size, respectively, relative to what Werner’s standard theory predicts.

Our results suggest that while there is support for Werner’s assumption regarding growth rates, mass changes profoundly alter the timing of transitions that are predicted to maximise fitness, and therefore the original model omits an important component that may contribute to the evolution of CLCs. Future studies should test for conditions that alter the costs of transitions, so that we can have a better understanding of how mass loss or gain affects fitness.

Richardson EL, White CR, Marshall DJ (2022) A comparative analysis testing Werner’s theory of complex life cycles. Functional Ecology PDF DOI

Metabolic phenotype mediates the outcome of competitive interactions in a response-surface field experiment

Authors: Lukas Schuster, Craig R White, and Dustin J Marshall

Published in: Ecology and Evolution

Abstract

Competition and metabolism should be linked. Intraspecific variation in metabolic rates and, hence, resource demands covary with competitive ability. The effects of metabolism on conspecific interactions, however, have mostly been studied under laboratory conditions.

We used a trait-specific response-surface design to test for the effects of metabolism on pairwise interactions of the marine colonial invertebrate, Bugula neritina in the field.

Specifically, we compared the performance (survival, growth, and reproduction) of focal individuals, both in the presence and absence of a neighbor colony, both of which had their metabolic phenotype characterized.

Survival of focal colonies depended on the metabolic phenotype of the neighboring individual, and on the combination of both the focal and neighbor colony metabolic phenotypes that were present.

Surprisingly, we found pervasive effects of neighbor metabolic phenotypes on focal colony growth and reproduction, although the sign and strength of these effects showed strong microenvironmental variability.

Overall, we find that the metabolic phenotype changes the strength of competitive interactions, but these effects are highly contingent on local conditions. We suggest future studies explore how variation in metabolic rate affects organisms beyond the focal organism alone, particularly under field conditions.

Schuster L, White CR, Marshall DJ (2021) Metabolic phenotype mediates the outcome of competitive interactions in a response‐surface field experiment. Ecology and Evolution PDF DOI 

Predicting the response of disease vectors to global change: The importance of allometric scaling

Authors: Louise S Nørgaard, Mariana Álvarez-Noriega, Elizabeth McGraw, Craig R White, and Dustin J Marshall

Published in: Global Change Biology

Abstract

The distribution of disease vectors such as mosquitoes is changing. Climate change, invasions and vector control strategies all alter the distribution and abundance of mosquitoes.

When disease vectors undergo a range shift, so do disease burdens. Predicting such shifts is a priority to adequately prepare for disease control. Accurate predictions of distributional changes depend on how factors such as temperature and competition affect mosquito life-history traits, particularly body size and reproduction.

Direct estimates of both body size and reproduction in mosquitoes are logistically challenging and time-consuming, so the field has long relied upon linear (isometric) conversions between wing length (a convenient proxy of size) and reproductive output. These linear transformations underlie most models projecting species’ distributions and competitive interactions between native and invasive disease vectors.

Using a series of meta-analyses, we show that the relationship between wing length and fecundity are nonlinear (hyperallometric) for most mosquito species. We show that whilst most models ignore reproductive hyperallometry (with respect to wing length), doing so introduces systematic biases into estimates of population growth. In particular, failing to account for reproductive hyperallometry overestimates the effects of temperature and underestimates the effects of competition. Assuming isometry also increases the potential to misestimate the efficacy of vector control strategies by underestimating the contribution of larger females in population replenishment.

Finally, failing to account for reproductive hyperallometry and variation in body size can lead to qualitative errors via the counter-intuitive effects of Jensen’s inequality. For example, if mean sizes decrease, but variance increases, then reproductive outputs may actually increase.

We suggest that future disease vector models incorporate hyperallometric relationships to more accurately predict changes in mosquito distribution in response to global change.

Nørgaard LS, Álvarez‐Noriega M, McGraw E, White CR, Marshall DJ (2021) Predicting the response of disease vectors to global change: The importance of allometric scaling. Global Change Biology PDF DOI 

Phytoplankton diversity affects biomass and energy production differently during community development

Authors: Giulia Ghedini, Dustin J Marshall, and Michel Loreau

Published in: Functional Ecology

Abstract

Biodiversity determines the productivity and stability of ecosystems but some aspects of biodiversity–ecosystem functioning relationships remain poorly resolved. One key uncertainty is the inter-relationship between biodiversity, energy and biomass production as communities develop over time. Energy production drives biomass accumulation but the ratio of the two processes can change during community development. How biodiversity affects these temporal patterns remains unknown.

We empirically assessed how species diversity mediates the rates of increase and maximum values of biomass and net energy production in experimental phytoplankton communities over 10 days in the laboratory. We used five phytoplankton species to assemble three levels of diversity (monocultures, bicultures and communities) and we quantify their changes in biomass production and energy fluxes (energy produced by photosynthesis, consumed by metabolism, and net energy production as their difference) as the cultures move from a low density, low competition system to a high density, high competition system.

We find that species diversity affects both biomass and energy fluxes but in different ways. Diverse communities produce net energy and biomass at faster rates, reaching greater maximum biomass but with no difference in maximum net energy production. Bounds on net energy production seem stronger than those on biomass because competition limits energy fluxes as biomass accumulates over time.

In summary, diversity initially enhances productivity by diffusing competitive interactions but metabolic density dependence reduces these positive effects as biomass accumulates in older communities. By showing how biodiversity affects both biomass and energy fluxes during community development, our results demonstrate a mechanism that underlies positive biodiversity effects and offer a framework for comparing biodiversity effects across systems at different stages of development and disturbance regimes.

Ghedini G, Marshall DJ, Loreau M (2021) Phytoplankton diversity affects biomass and energy production differently during community development. Functional Ecology PDF DOI 

How does spawning frequency scale with body size in marine fishes?

Authors: Dustin J Marshall, Diego R Barneche, and Craig R White

Published in: Fish and Fisheries

Abstract

How does fecundity scale with female size? Female size not only affects the number and size of offspring released in any one reproductive bout (i.e. batch fecundity) but also affects frequency of bouts that occur within a given spawning season (i.e. spawning frequency).

Previous studies have noted contrasting effects of female size on spawning frequency such that the effect of female size on reproductive output and total egg production of a population remains unclear. If smaller females spawn more frequently, this could effectively nullify hyperallometry—the disproportionate contribution of larger females to batch fecundity.

Here, we explore the relationship between female size and spawning frequency in marine fishes and test this relationship while controlling for phylogeny.

Within all of the species considered, spawning frequency scaled positively with body size. Comparing across species, the smallest species showed steeper scaling than the largest.

Considering only batch fecundity scaling probably underestimates the relationship between body size and absolute fecundity for many species; reproduction is likely to be more hyperallometric than is currently appreciated based on batch fecundity estimates. Second, an understanding of fecundity scaling depends on estimates of batch fecundity, spawning frequency and spawning duration—we have far more estimates of the first parameter than we do the others, and more studies are required.

Marshall DJ, Barneche DR, White CR (2021) How does spawning frequency scale with body size in marine fishes? Fish and Fisheries PDF DOI 

Metabolism drives demography in an experimental field test

Authors: Lukas Schuster, Hayley Cameron, Craig R White, and Dustin J Marshall

Published in: Proceedings of the National Academy of Sciences of the United States of America

Significance

Biology has long-standing rules about how metabolism and demography should covary. These rules connect physiology to ecology but remarkably, these rules have only ever been tested indirectly.

Using a model marine invertebrate, we created experimental field populations that varied in metabolic rate but not body size.

We show that metabolism qualitatively affects population growth and carrying capacity in ways predicted by theory but that scaling relationships for these parameters, as well as estimates of energy use at carrying capacity, depart from classic predictions.

That metabolism affects demography in ways that depart from canonical theory has important implications for predicting how populations may respond to global change and size-selective harvesting.

Abstract

Metabolism should drive demography by determining the rates of both biological work and resource demand. Long-standing “rules” for how metabolism should covary with demography permeate biology, from predicting the impacts of climate change to managing fisheries.
Evidence for these rules is almost exclusively indirect and in the form of among-species comparisons, while direct evidence is exceptionally rare.

In a manipulative field experiment on a sessile marine invertebrate, we created experimental populations that varied in population size (density) and metabolic rate, but not body size. We then tested key theoretical predictions regarding relationships between metabolism and demography by parameterizing population models with lifetime performance data from our field experiment.

We found that populations with higher metabolisms had greater intrinsic rates of increase and lower carrying capacities, in qualitative accordance with classic theory. We also found important departures from theory—in particular, carrying capacity declined less steeply than predicted, such that energy use at equilibrium increased with metabolic rate, violating the long-standing axiom of energy equivalence.

Theory holds that energy equivalence emerges because resource supply is assumed to be independent of metabolic rate. We find this assumption to be violated under real-world conditions, with potentially far-reaching consequences for the management of biological systems.

Schuster L, Cameron H, White CR, Marshall DJ (2021) Metabolism drives demography in an experimental field test. Proceedings of the National Academy of Sciences of the United States of America PDF DOI